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Computer assisted identification and classification of streptomycete promoters.

机译:链霉菌启动子的计算机辅助识别和分类。

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摘要

Short sequences that were over represented in a database of Streptomyces promoter region sequences were identified. These sequences and others that were selected on the basis of the characteristics of known promoters, were tested to determine if they were found predominantly at particular distances from the transcription start site. In several cases obvious clusters were recorded. This has allowed the objective identification of potential promoter core sequences. In some cases these may define novel promoter classes. 150 Streptomyces promoters have been listed and grouped on this basis. A new and extended consensus sequence for the Streptomyces E.coli sigma 70-like promoters was determined. It showed differences from that of E.coli, both in sequence and in the spacing between the -35 and -10 regions.
机译:鉴定了在链霉菌启动子区域序列的数据库中过度表达的短序列。测试了这些序列和其他基于已知启动子特性选择的序列,以确定它们是否主要在距转录起始位点的特定距离处发现。在某些情况下,记录到明显的簇。这样就可以客观鉴定潜在的启动子核心序列。在某些情况下,这些可能会定义新的启动子类别。已列出150个链霉菌启动子并在此基础上分组。确定了链霉菌大肠杆菌sigma 70样启动子的新的和扩展的共有序列。它显示出与大肠杆菌的区别,在序列上以及-35和-10区之间的间隔上。

著录项

  • 作者

    Bourn, W R; Babb, B;

  • 作者单位
  • 年度 1995
  • 总页数
  • 原文格式 PDF
  • 正文语种 en
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